YukunR/dsh-ezprot-plugin

README 摘要

dsh-ezprot-plugin English 中文 A plug-and-play proteomics analysis plugin for DeepSeek Harness . It wraps a full protein-expression analysis workflow — normalization → PCA → batch correction → differential analysis → GO/KEGG enrichment → GSEA — behind a conversation: give the agent your data file, answer a few questions (which columns are what, which groups to compare), and the plugin prepares everything automatically and walks through every step with visible summaries and figures, ending with an interpretation report. No R or terminal knowledge required: the plugin detects or silently installs its own R 4.4.0 runtime and package library on first use (one-time, 10–20 min). Install Prerequisites: Node.js (bundles npx ) and pnpm — npm install -g pnpm . Requires the dsh CLI (Windows / macOS / Linux), one command: If dsh is already installed globally, drop the npx @deepseek-ai/ prefix: Then restart dsh web . Every session's agent gains the proteomics tools. Usage Just talk to the agent. For example: My proteomics data is at D:\my-experiment\origin data.txt with sample groups in D:\my-experiment\sample info.txt , mouse samples. Compare HC and HD against NC. The agent will inspect and QC y…

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