Paraso42/dsh-bioinfo

README 摘要

dsh-bioinfo 生信模式 (Bioinformatics Mode) — a complete, research-grade bioinformatics agent preset for DeepSeek Harness (DSH), published as a replicable preset kit. One repository carries everything needed to rebuild, on your own DSH instance, the exact preset this project was developed and acceptance-tested on: preset identity, agent composition + persona, the protein-tools plugin (7 model tools), a 7-skill library with 14 backend scripts, deployment scripts, and a small acceptance-fixture kit that proves your replica behaves like the reference machine. What you get Layer Contents Preset preset.yml , agent.cordis.yml (persona + standard agent rows + local plugin row) Plugin plugins/protein-tools.js — esmfold predict / pp interact / vina dock / af2 predict / struct eval / vscreen run / md run Skills skills/ — biopython, biopython-analyses, protein-modeling, protein-quality, chem-informatics, bio-data-hub, bio-visualization (+ 14 resource scripts) Deploy deploy/ — WSL2 LocalColabFold bootstrap, AF2 params download (GCS, 8-way ranged), parallel downloader, acceptance runner Fixtures fixtures/acceptance/ — small positive controls (PDB/CSV/JSON/PNG, 3.3 MB) Quick start 1. Install DSH — np…

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